Proseminar : Introduction to Bioinformatics

Lecturer

Milad Miladi, Pavan Videm, Stefan Mautner

Dates

• Inital meeting: 23.10 at 10:00-12:00 in SR 02 006 Build. 106

Organisation

• English or German
• Biology introduction
• Group talks: 15-30 minutes, with small handouts, and a quiz for your peers
• Active participation for all talks
• Give 25-30 min presentations (= talk + discussion), topic should be presented clearly and concisely
• Slides Introduction
• Topics - Part I: Biology
• Finalized Chapter-Topic Assignments

Chapters

• Chapter 1: Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design
  Given to: Vu, The Son
  


• Chapter 2: RNA Secondary Structure Prediction from Multi-aligned Sequences
  


• Chapter 3: A Simple Protocol for the Inference of RNA Global Pairwise Alignments
  Given to: Hamberger, Felix
  


• Chapter 4: De Novo Secondary Structure Motif Discovery Using RNAProfile
  Given to: Willaredt, Mario
  


• Chapter 8: Quality Control of RNA-Seq Experiments
  Given to: Hein, Caroline
  


• Chapter 9: Accurate Mapping of RNA-Seq Data
  Given to: Haug, Stefan
  


• Chapter 11: Transcriptome Assembly and Alternative Splicing Analysis
  Given to: Tchassem, Waldeck
  


• Chapter 13: Prediction of miRNA Targets
  Given to: Akmaz, Kürsat
  


• Chapter 19: The ViennaRNA Web Services
  Given to: Rajab, Waleed
  


• Chapter 22: Rfam: Annotating Families of Non-Coding RNA Sequences
  Given to: Ahanin, Darius
  


• Chapter 23: ASPicDB: A Database Web Tool for Alternative Splicing Analysis
  


• Chapter 25: Computational Design of Artificial RNA Molecules for Gene Regulation
  Given to: Schlageter, Moreno Thomas
  


• All papers are taken from the RNA Bioinformatics book.
  RNA Bioinformatics
  

  File:RNA Bioinformatics